Re: [Bioc-devel] Rsamtools does not export "path"

2017-12-20 Thread Ou, Jianhong
Thank you Herve for the information. Yours Sincerely, Jianhong Ou TEL: 508-856-5379 LRB 608 Bioinformatician of Bioinformatics core at Department of Molecular, Cell and Cancer Biology UMASS Medical School 364 Plantation Street Worcester, MA 01605 Confidentiality Notice: This e-mail message, in

Re: [Bioc-devel] Rsamtools does not export "path"

2017-12-19 Thread Hervé Pagès
Hi Jianhong, I didn't touch the "path" method defined in Rsamtools, only moved the path() generic from Rsamtools to BiocGenerics. This broke a few NAMESPACE in other packages that Marcel and I are in the process of fixing. The build report should already look much better tomorrow (Wed 20) and mos

[Bioc-devel] Rsamtools does not export "path"

2017-12-18 Thread Ou, Jianhong
Hi Herve, The recent update of Rsamtools is using a new method of path. However, you did not export this method. Will you export it? Or we should drop the dependence of this method? Yours Sincerely, Jianhong Ou TEL: 508-856-5379 LRB 608 Bioinformatician of Bioinformatics core at Department of