Hej!
Martin I guess that's for you :-) And I suppose it might only be temporary (due
to development in BIocParallel/ShortRead), but I stumbled on the following:
library(ShortRead)
srdistance(DNAStringSet("AA"),"AAATAA")
fails with the following error:
Error in bplapply(X, FUN, ..., BPRESUM
Hi Nico,
Can you try again with BiocParallel 1.1.16? Likely related to this post,
https://stat.ethz.ch/pipermail/bioc-devel/2015-March/007114.html
Valerie
On 03/16/2015 07:05 AM, Nicolas Delhomme wrote:
Hej!
Martin I guess that's for you :-) And I suppose it might only be temporary (due
t
Hej Valerie!
Yes, it did fix the issue, but only after I also installed the snow package.
Could it be that that's another dependency that has been overlooked in
BiocParallel?
Nico
---
Nicolas Delhomme
The Street Lab
Department of Pl
