Re: [Bioc-devel] SummarizedExperiment initialisation and manipulation question.

2015-06-30 Thread Nicolas Delhomme
Thanks for the quick action :-) Nico --- Nicolas Delhomme, PhD The Street Lab Department of Plant Physiology Umeå Plant Science Center Tel: +46 90 786 5478 Email: nicolas.delho...@umu.se SLU - Umeå universitet Umeå S-901 87 Sweden

Re: [Bioc-devel] SummarizedExperiment initialisation and manipulation question.

2015-06-29 Thread Hervé Pagès
Done in SummarizedExperiment 0.3.2. Thanks for the feedback, H. On 06/29/2015 10:26 PM, Hervé Pagès wrote: Hi Nico, It seems reasonable indeed to support rowRanges<- on SummarizedExperiment0. It might be a little bit surprising for the user that the setter changes the class of the object but i

Re: [Bioc-devel] SummarizedExperiment initialisation and manipulation question.

2015-06-29 Thread Hervé Pagès
Hi Nico, It seems reasonable indeed to support rowRanges<- on SummarizedExperiment0. It might be a little bit surprising for the user that the setter changes the class of the object but it looks like a perfectly legit situation for doing so here. Also there are some precedents: > x <- 1:5 >

[Bioc-devel] SummarizedExperiment initialisation and manipulation question.

2015-06-29 Thread Nicolas Delhomme
Hej alla! In the simpleRNASeq function of the easyRNASeq package, I start by instantiating a SummarizedExperiment object not initially providing the rowRanges. This results in the creation of an object of the class SummarizedExperiment0. When later, once I have validated the annotation, I try