I am trying to run the basic install with biocLite. I am running R 3.2.2
on Ubuntu 14.04.
I install the BiocInstaller package with
source("http://bioconductor.org/biocLite.R";)
I then try again to just install S4Vectors but it errors out on the
src_utils file with the following error:
str_util
Hi Charles,
What compiler do you use? Please show the entire output of
biocLite("S4Vectors") plus your sessionInfo(). Thanks!
H.
On 08/27/2015 06:19 AM, Charles Determan wrote:
I am trying to run the basic install with biocLite. I am running R 3.2.2
on Ubuntu 14.04.
I install the BiocInstall
I am simply using gcc-4.8
Here is the full output:
BioC_mirror: http://bioconductor.org
Using Bioconductor version 3.1 (BiocInstaller 1.18.4), R version 3.2.2.
Installing package(s) ‘S4Vectors’
trying URL '
http://bioconductor.org/packages/3.1/bioc/src/contrib/S4Vectors_0.6.3.tar.gz
'
Content typ
On 08/27/2015 10:21 AM, Charles Determan wrote:
I am simply using gcc-4.8
Here is the full output:
BioC_mirror: http://bioconductor.org
Using Bioconductor version 3.1 (BiocInstaller 1.18.4), R version 3.2.2.
Installing package(s) ‘S4Vectors’
trying URL
'http://bioconductor.org/packages/3.1/bioc
Thanks Herve, that solved the problem. It installed correctly now.
Regards,
Charles
On Thu, Aug 27, 2015 at 4:14 PM, Hervé Pagès wrote:
> On 08/27/2015 10:21 AM, Charles Determan wrote:
>
>> I am simply using gcc-4.8
>>
>> Here is the full output:
>>
>> BioC_mirror: http://bioconductor.org
>>
