[Bioc-devel] VariantAnnotation: filterVcf with chunks duplicates header

2015-08-07 Thread Julian Gehring
Hi, When I use the 'filterVcf' function to process a VCF file in chunks, the output file contains as many copies of the header as there are chunks. Consider the example, adapted from the 'filterVcf' man page: library(VariantAnnotation) fl <- system.file(package = "VariantAnnotation", "extdat

Re: [Bioc-devel] VariantAnnotation: filterVcf with chunks duplicates header

2015-08-07 Thread Valerie Obenchain
Thanks for the report and reproducible example. Now fixed in 1.14.8 and 1.15.22. Valerie On 08/07/2015 07:25 AM, Julian Gehring wrote: Hi, When I use the 'filterVcf' function to process a VCF file in chunks, the output file contains as many copies of the header as there are chunks. Consider