Re: [Bioc-devel] VariantAnnotation: writeVcf fails if sample names not ordered

2014-02-06 Thread Julian Gehring
Great, thanks for fixing this. On 02/05/2014 08:38 PM, Michael Lawrence wrote: Thanks, fixed in 1.9.35/1.8.11. On Wed, Feb 5, 2014 at 1:21 AM, Julian Gehring wrote: Hi, I'm not sure whether this is related to the other bug. Anyway, 'writeVcf' fails if the sample names of a 'VRanges' obj

Re: [Bioc-devel] VariantAnnotation: writeVcf fails if sample names not ordered

2014-02-05 Thread Michael Lawrence
Thanks, fixed in 1.9.35/1.8.11. On Wed, Feb 5, 2014 at 1:21 AM, Julian Gehring wrote: > Hi, > > I'm not sure whether this is related to the other bug. Anyway, 'writeVcf' > fails if the sample names of a 'VRanges' object are not sorted in ascending > order (in the latest bioc-devel): > > #+BEG

[Bioc-devel] VariantAnnotation: writeVcf fails if sample names not ordered

2014-02-05 Thread Julian Gehring
Hi, I'm not sure whether this is related to the other bug. Anyway, 'writeVcf' fails if the sample names of a 'VRanges' object are not sorted in ascending order (in the latest bioc-devel): #+BEGIN_SRC R library(VariantAnnotation) vr = VRanges(1:2, IRanges(100:101, 200:201), ref = c