Hi Nico,
On 07/11/2013 02:11 AM, Nicolas Delhomme wrote:
That particular machine has been up for 40 days although all the parameters
are in the green right now.
Doing an rbind is as quick as what you reported:
system.time(df2 <- rbind(df, df))
user system elapsed
0.104 0.000 0.1
That particular machine has been up for 40 days although all the parameters
are in the green right now.
Doing an rbind is as quick as what you reported:
> system.time(df2 <- rbind(df, df))
user system elapsed
0.104 0.000 0.104
And now I do get the GAlignments warning:
> GappedAlign
Hej Hervé!
---
Nicolas Delhomme
Genome Biology Computational Support
European Molecular Biology Laboratory
Tel: +49 6221 387 8310
Email: nicolas.delho...@embl.de
Meyerhofstrasse 1 - Postfach 10.2209
69102 Heidelberg, Germany
--
Hi Martin,
On Jul 10, 2013, at 8:40 PM, Martin Morgan wrote:
>
> - Nicolas Delhomme wrote:
>> Hej Bioc Core!
>>
>> There was some discussion last year about implementing a BamStreamer (à la
>> FastqStreamer), but I haven't seen anything like it in the current devel.
>> I've implemented t
Hi Nico,
On 07/09/2013 08:07 AM, Nicolas Delhomme wrote:
Hej Bioc Core!
There was some discussion last year about implementing a BamStreamer (à la
FastqStreamer), but I haven't seen anything like it in the current devel. I've
implemented the following function that should do the job for me -
- Nicolas Delhomme wrote:
> Hej Bioc Core!
>
> There was some discussion last year about implementing a BamStreamer (à la
> FastqStreamer), but I haven't seen anything like it in the current devel.
> I've implemented the following function that should do the job for me - I
> have many ver
Hej Bioc Core!
There was some discussion last year about implementing a BamStreamer (à la
FastqStreamer), but I haven't seen anything like it in the current devel. I've
implemented the following function that should do the job for me - I have many
very large files, and I need to use a cluster w
