of cores used)?
Thanks,
Ludwig
--
Dr. Ludwig Geistlinger
CUNY School of Public Health
From: Bioc-devel on behalf of
Kasper Daniel Hansen
Sent: Friday, April 27, 2018 10:29 AM
To: Hervé Pagès
Cc: bioc-devel@r-project.org
Subject: Re: [Bioc-devel] build mac
g
--
Dr. Ludwig Geistlinger
CUNY School of Public Health
From: Bioc-devel on behalf of Kasper Daniel Hansen
Sent: Friday, April 27, 2018 10:29 AM
To: Hervé Pagès
Cc: bioc-devel@r-project.org
Subject: Re: [Bioc-devel] build machines
Thanks.
I used
/usr/bi
of Kasper Daniel
Hansen
Sent: Friday, April 27, 2018 10:29 AM
To: Hervé Pagès
Cc: bioc-devel@r-project.org
Subject: Re: [Bioc-devel] build machines
Thanks.
I used
/usr/bin/time -v R CMD check ...
to record the max memory usage of the check, which for minfi suggests
around 5Gb. That's
Thanks.
I used
/usr/bin/time -v R CMD check ...
to record the max memory usage of the check, which for minfi suggests
around 5Gb. That's a lot.
Best,
Kasper
On Thu, Apr 26, 2018 at 3:02 PM, Hervé Pagès wrote:
> Hi,
>
> The Linux and Windows builders have 32 GB of RAM, the Mac
> builders 64
Hi,
The Linux and Windows builders have 32 GB of RAM, the Mac
builders 64 Gb.
We also run concurrent R CMD check's.
Here is a summary:
platform RAM nb of nb of concurrent
(Gb) coresR CMD check's
-
Hi Daniel,
I have the same issue with my package (new contribution). I just finish
reviewing the package with the modifications requested.
I am having a warning because R CMD check is exceeding 5 min, but this is
happening only in the Windows machine.
In Linux and OSX the check finishes in <= 4m
We have been working on the minfi package lately, with a move to a
DelayedArray backend.
Right now there are some weird issues regarding timings in R CMD check.
Leaving aside the issue that the tests (now disabled) and examples are too
slow, we get some very weird behaviour.
An example is the cur
t;Gabe Becker"
> > Cc: bioc-devel@r-project.org, "Jim Fitzgerald" <
> fitzgerald.ja...@gene.com>
> > Sent: Thursday, October 30, 2014 10:23:58 AM
> > Subject: Re: [Bioc-devel] R-devel update schedule/strategy for Bioc
> devel build machines
> >
&
- Original Message -
> From: "Dan Tenenbaum"
> To: "Gabe Becker"
> Cc: bioc-devel@r-project.org, "Jim Fitzgerald"
> Sent: Thursday, October 30, 2014 10:23:58 AM
> Subject: Re: [Bioc-devel] R-devel update schedule/st
- Original Message -
> From: "Gabe Becker"
> To: bioc-devel@r-project.org, "Jim Fitzgerald"
> Sent: Thursday, October 30, 2014 10:21:17 AM
> Subject: [Bioc-devel] R-devel update schedule/strategy for Bioc devel build
> machines
>
> Bioc adm
Bioc admins,
We have an automatic build/test mechanism for our internal packages which
we'd like to match the Bioc build machines as closely as possible. AFAIU,
the exact commit-specific version of R-devel used on your devel build
server changes occasionally within Bioc releases, and we'd like to
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