[Bioc-devel] cryptic error in VariantAnnotation::locateVariants()

hi Valerie, i'm afraid i have hit another cryptic error in locateVariants() related to some recent update of the devel version of the package, could you take a look at it? (code below..) thanks!! robert. == library(VariantAnnotation) library(TxDb.Hsa

Re: [Bioc-devel] cryptic error in VariantAnnotation::locateVariants()

Hi, Thanks for the report. Now fixed in 1.13.31. This problem, like the last one you reported, was related to CDSID becoming an IntegerList. When region=AllVariants, results are combined and ordered by QUERYID, TXID, CDSID and GENEID. In your example ties were not broken by QUERYID or TXID an