Hi, Arne.
This question is best posted on the support site:
https://support.bioconductor.org/
To give a preview of the answer, though, while coverage and binned counts
are related concepts, they are not really identical. The csaw package is
looking for read counts.
Sean
On Tue, Jul 7, 2015 a
Hello,
would it be possible+reasonable to enter csaw peak calling with RleList
object such as those generated by the GenomicAlignments' coverage method?
I'm not 100% sure but. I guess it'd be more performant to store and load
the RleList objects compared to bam files.
regards,
Arne
