Re: [Bioc-devel] fail to build a package after updating Bioconductor packages

2016-01-28 Thread Yu Sun
Thanks Jean! You solved my problem :) Yu On Wed, Jan 27, 2016 at 3:35 PM, Fan, Jean wrote: > Hi Yu, > > It looks like you’re using R Markdown v2 instead of R Markdown v1 so you > will have to change your vignette engine. > Your vignette likely contains %\VignetteEngine{knitr::knitr} > You will n

Re: [Bioc-devel] fail to build a package after updating Bioconductor packages

2016-01-27 Thread Fan, Jean
Hi Yu, It looks like you’re using R Markdown v2 instead of R Markdown v1 so you will have to change your vignette engine. Your vignette likely contains %\VignetteEngine{knitr::knitr} You will need to change this to %\VignetteEngine{knitr::rmarkdown} And you will need to add both knitr and rmarkdo

Re: [Bioc-devel] fail to build a package after updating Bioconductor packages

2016-01-27 Thread Ge Tan
The error message explains the reason. Just install pandoc and pandoc-citeproc. Ge On 27/01/2016, 14:20, "Bioc-devel on behalf of Yu Sun" wrote: >Hi, > >I am very new in developing bioconductor packages, and had an annoying >problem yesterday afternoon. I wrote a package named sscu and it u

[Bioc-devel] fail to build a package after updating Bioconductor packages

2016-01-27 Thread Yu Sun
Hi, I am very new in developing bioconductor packages, and had an annoying problem yesterday afternoon. I wrote a package named sscu and it used to have no problem to build a tarball, and I plan to submit it to Bioconductor very soon. But yesterday after I updated my bioconductor packages using th