Re: [Bioc-devel] github mirror out of sync for ensembldb

Hi, Ahh, ok. What I meant was that the "master" branch in Bioconductor-mirror is not up to date with bioc-devel. I could see that aCGH did have a release-3.5 branch, but that the "master" branch wasn't updated. You can see something similar for

Re: [Bioc-devel] github mirror out of sync for ensembldb

> On 3 May 2017, at 19:51, Martin Morgan wrote: > > On 05/03/2017 01:10 PM, Leonardo Collado Torres wrote: >> Hi, >> >> I don't think that any of the Bioconductor-mirror repos have been >> updated to match the current bioc-devel branch. For example, look at >>

Re: [Bioc-devel] github mirror out of sync for ensembldb

On 05/03/2017 01:10 PM, Leonardo Collado Torres wrote: Hi, I don't think that any of the Bioconductor-mirror repos have been updated to match the current bioc-devel branch. For example, look at https://github.com/Bioconductor-mirror/aCGH/blob/master/DESCRIPTION#L4 which is one of the first

Re: [Bioc-devel] github mirror out of sync for ensembldb

Hi, I don't think that any of the Bioconductor-mirror repos have been updated to match the current bioc-devel branch. For example, look at https://github.com/Bioconductor-mirror/aCGH/blob/master/DESCRIPTION#L4 which is one of the first packages by alphabetical order. My guess is that they are

[Bioc-devel] github mirror out of sync for ensembldb

Hi, the github mirror for ensembldb seems to be out of sync with the BioC svn, i.e. the DESCRIPTION in https://github.com/Bioconductor-mirror/ensembldb/blob/master/DESCRIPTION is still at version 1.99.14 while in the svn it's already 2.1.0. First I thought the sync is not yet finished, but

Re: [Bioc-devel] GitHub mirror not synced for GenomicTuples

On 03/07/2017 08:58 AM, Malgorzata Nowicka wrote: Hello, I have the same issue for the DRIMSeq package. The Bioconductor git mirror is not synchronized with the svn. Is there a way I could fix that or somebody from the core team has to do that? I will use the squashing approach for the next

Re: [Bioc-devel] GitHub mirror not synced for GenomicTuples

Hello, I have the same issue for the DRIMSeq package. The Bioconductor git mirror is not synchronized with the svn. Is there a way I could fix that or somebody from the core team has to do that? I will use the squashing approach for the next time but if this happens again, should I write it

Re: [Bioc-devel] GitHub mirror not synced for GenomicTuples

Thanks, Martin! On 22 January 2017 at 13:10, Martin Morgan wrote: > On 01/22/2017 10:18 AM, Peter Hickey wrote: >> >> Hi, >> >> Recent changes (last few days) that successfully synced from my own GitHub >> repo to the BioC SVN and consequent builds don't seem to

Re: [Bioc-devel] GitHub mirror not synced for GenomicTuples

On 01/22/2017 10:18 AM, Peter Hickey wrote: Hi, Recent changes (last few days) that successfully synced from my own GitHub repo to the BioC SVN and consequent builds don't seem to have propagated to the BioC GitHub mirror. Anything I should/can be doing to address this? Thanks; I think these

Re: [Bioc-devel] GitHub mirror not synced for GenomicTuples

Sorry, I forgot to say this is the GenomicTuples package On 22 January 2017 at 10:18, Peter Hickey wrote: > Hi, > > Recent changes (last few days) that successfully synced from my own GitHub > repo to the BioC SVN and consequent builds don't seem to have propagated to >

[Bioc-devel] GitHub mirror not synced for GenomicTuples

Hi, Recent changes (last few days) that successfully synced from my own GitHub repo to the BioC SVN and consequent builds don't seem to have propagated to the BioC GitHub mirror. Anything I should/can be doing to address this? Thanks, Pete [[alternative HTML version deleted]]

Re: [Bioc-devel] github-mirror of ensembldb out of sync with BioC svn

On 10/19/2016 11:53 AM, Leonardo Collado Torres wrote: Hi, The same is true for recount and regionReport. derfinder and my other packages are in sync though. please see this post https://stat.ethz.ch/pipermail/bioc-devel/2016-October/009940.html also feel free to watch the progress at

Re: [Bioc-devel] github-mirror of ensembldb out of sync with BioC svn

Hi, The same is true for recount and regionReport. derfinder and my other packages are in sync though. Best, Leo On Wed, Oct 19, 2016 at 3:34 AM, Rainer Johannes wrote: > I just wanted to report that the github-mirror for ensembldb is out of > sync with the BioC

[Bioc-devel] github-mirror of ensembldb out of sync with BioC svn

I just wanted to report that the github-mirror for ensembldb is out of sync with the BioC svn. You're most likely already working on that. In any rate, thanks for your great work! ___ Bioc-devel@r-project.org mailing list

Re: [Bioc-devel] github mirror and svn out of sync

thanks Martin! Now everything is in sync again. You're right, the git commits were commited as separate svn commits; an alternative would be to use `git-merge --squash`, but I didn't try that one; so far I used `git cherry-pick` to merge a selected range of git commits into the devel branch

Re: [Bioc-devel] github mirror and svn out of sync

On 09/21/2016 12:01 AM, Rainer Johannes wrote: Dear all, I recently observed that the svn and the github mirror of `ensembldb` is out of sync. Is this something specific to `ensembldb` or is this a general problem? Is there anything I could do to fix this? I think it is up-to-date now? I

[Bioc-devel] github mirror and svn out of sync

Dear all, I recently observed that the svn and the github mirror of `ensembldb` is out of sync. Is this something specific to `ensembldb` or is this a general problem? Is there anything I could do to fix this? thanks, jo ___ Bioc-devel@r-project.org

Re: [Bioc-devel] github mirror

On Fri, Feb 19, 2016 at 12:52 PM, Dan Tenenbaum wrote: > https://github.com/Bioconductor/mirror.git I cloned out the update_remotes.sh script. Executing that results in a fatal error because the "bioc" remote has already been defined. So I edited that script to

Re: [Bioc-devel] github mirror

il.com> > Cc: "bioc-devel" <bioc-devel@r-project.org> > Sent: Friday, February 19, 2016 9:32:42 AM > Subject: Re: [Bioc-devel] github mirror > What is the URL of your github repository? > Dan > > > - Original Message - >> From: "Kasper