Re: [Bioc-devel] mapIds methods for ExpressionSet and SummarizedExperiment

2016-01-06 Thread Morgan, Martin
_ > From: Bioc-devel [bioc-devel-boun...@r-project.org] on behalf of Ludwig > Geistlinger [ludwig.geistlin...@bio.ifi.lmu.de] > Sent: Thursday, December 17, 2015 5:05 AM > To: bioc-devel@r-project.org > Subject: [Bioc-devel] mapIds methods for ExpressionSet and >

Re: [Bioc-devel] mapIds methods for ExpressionSet and SummarizedExperiment

2016-01-06 Thread Ludwig Geistlinger
ct.org] on behalf of Ludwig > Geistlinger [ludwig.geistlin...@bio.ifi.lmu.de] > Sent: Thursday, December 17, 2015 5:05 AM > To: bioc-devel@r-project.org > Subject: [Bioc-devel] mapIds methods for ExpressionSet and > SummarizedExperiment > > Dear Bioc Team, > > I have im

Re: [Bioc-devel] mapIds methods for ExpressionSet and SummarizedExperiment

2015-12-21 Thread Ludwig Geistlinger
entifier, so that one references this when > translating from probeset to gene identifiers. > > Martin > > From: Bioc-devel [bioc-devel-boun...@r-project.org] on behalf of Ludwig > Geistlinger [ludwig.geistlin...@bio.ifi.lmu.de] > Sent:

Re: [Bioc-devel] mapIds methods for ExpressionSet and SummarizedExperiment

2015-12-18 Thread Morgan, Martin
, December 18, 2015 1:15 PM To: Ludwig Geistlinger; bioc-devel@r-project.org Subject: Re: [Bioc-devel] mapIds methods for ExpressionSet and SummarizedExperiment Hi Ludwig -- It would be really great to see what you've put together; can you make your code available somewhere, mayb

Re: [Bioc-devel] mapIds methods for ExpressionSet and SummarizedExperiment

2015-12-18 Thread Morgan, Martin
devel] mapIds methods for ExpressionSet and SummarizedExperiment Dear Bioc Team, I have implemented mapIds methods mapping featureNames (ExpressionSet) and rownames (SummarizedExperiment) between major gene ID types such as ENSEMBL and ENTREZ by passing that on AnnotationDbi::mapIds. Giv

[Bioc-devel] mapIds methods for ExpressionSet and SummarizedExperiment

2015-12-17 Thread Ludwig Geistlinger
Dear Bioc Team, I have implemented mapIds methods mapping featureNames (ExpressionSet) and rownames (SummarizedExperiment) between major gene ID types such as ENSEMBL and ENTREZ by passing that on AnnotationDbi::mapIds. Given an ExpressionSet/SummarizedExperiment and an organism under investigati