Hi All
My package is in review and the build is failing since a suggested package
(Rsubread) is not available on windows. Is there a way for me to instruct the
build machine on bioc to use: _R_CHECK_FORCE_SUGGESTS_ = FALSE ??
Best,
Vivek
Vivek Bhardwaj
PhD Candidate | Internation
Vivek,
Why (ie in what sense) is the package suggested? Is it used in your tests,
examples, or vignette?
If so, those would also fail during R CMD check if the package is not
available even if that environment variable is were false, wouldn't they?
~G
On Fri, May 18, 2018 at 1:55 PM, Bhardwaj,
Only if Rsubread is used unconditionally.
On Fri, May 18, 2018 at 2:00 PM, Gabe Becker wrote:
> Vivek,
>
> Why (ie in what sense) is the package suggested? Is it used in your tests,
> examples, or vignette?
>
> If so, those would also fail during R CMD check if the package is not
> available even
I guess I was unclear. what I was asking is if it is, e.g., *required* for
your vignette, e.g. to create a data structure that is then used by your
functions.
That is a pretty standard use of Suggests, though obviously not the only
one. My point was really that the package only being suggests is n
You can create a plain text file in the root directory of your package
.BBSoptions with the line
UnsupportedPlatform: win
Your package will not be available on Windows, losing about 1/2 your
potential audience. A better strategy is to figure out why you are
Suggests:'ing Rsubread, and find
On Fri, May 18, 2018 at 2:26 PM, Martin Morgan
wrote:
> You can create a plain text file in the root directory of your package
> .BBSoptions with the line
>
> UnsupportedPlatform: win
>
> Your package will not be available on Windows, losing about 1/2 your
> potential audience.
I'm not sure how
@All thanks for your comments
I have provided Rsubread mapping wrapper as an optional step in the pipeline.
Users can continue the analysis after mapping with their tool of choice as
well. Therefore I added it in "suggests" and skip running it in the example and
don't evaluate that chunk in the
Immunobiology and Epigenetics
St�beweg 51, Freiburg
From: Bhardwaj, Vivek
Sent: Saturday, May 19, 2018 10:35 AM
To: Michael Lawrence; Martin Morgan
Cc: bioc-devel@r-project.org
Subject: Re: [Bioc-devel] modify _R_CHECK_FORCE_SUGGESTS_ ?
@All thanks for your comments
netics
> Stübeweg 51, Freiburg
>
> From: Bhardwaj, Vivek
> Sent: Saturday, May 19, 2018 10:35 AM
> To: Michael Lawrence; Martin Morgan
> Cc: bioc-devel@r-project.org
> Subject: Re: [Bioc-devel] modify _R_CHECK_FORCE_SUGGESTS_ ?
>
>
>
Epigenetics
Stübeweg 51, Freiburg
From: Bhardwaj, Vivek
Sent: Saturday, May 19, 2018 10:35 AM
To: Michael Lawrence; Martin Morgan
Cc: bioc-devel@r-project.org
Subject: Re: [Bioc-devel] modify _R_CHECK_FORCE_SUGGESTS_ ?
@All thanks for your comments
I have provided Rsubread mapping wrapper as
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