Hello,
After reverting to the release version of GenomeInfoDb (1.10.2) the error
disappears.
In my defense, disaster is overstating it a bit, especially given the context.
GenomeInfoDb::Seqinfo() has been failing because of changes to the NCBI servers
(and still continues to fail). The devel v
On 02/06/2017 10:13 AM, Raymond Cavalcante wrote:
Oops, I got so caught up in the setting up the code I forgot to say what the
error was:
Error in match.arg(pruning.mode) :
'arg' should be one of “error”, “coarse”, “fine”, “tidy”
you have a mixture of 'release' (even-numbered y in x.y.z) an
Oops, I got so caught up in the setting up the code I forgot to say what the
error was:
Error in match.arg(pruning.mode) :
'arg' should be one of “error”, “coarse”, “fine”, “tidy”
Thanks again,
Raymond
> On Feb 6, 2017, at 10:10 AM, Raymond Cavalcante wrote:
>
> Hello,
>
> Perhaps this is
Hello,
Perhaps this is related to problems in GenomeInfoDb::Seqinfo() and NCBI server
file structure changes, but rtracklayer::import() is failing when I specify a
genome.
See below for example code.
Thanks,
Raymond Cavalcante
library(annotatr)
# These fail
file = system.file('extdata', 'tes
