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From: Shepherd, Lori
Sent: Wednesday, November 14, 2018 11:41:56 AM
To: Pages, Herve; Obenchain, Valerie; Tim Triche, Jr.; bioc-devel
Subject: Re: [Bioc-devel] submitting a tiny data package
(GmapGenome.Hsapiens.rCRS)
Agreed the file should be in annotationhub. I can give you S4 access to upl
-devel
Subject: Re: [Bioc-devel] submitting a tiny data package
(GmapGenome.Hsapiens.rCRS)
Hi guys,
OTOH indexMTGenome() only takes 20s on my laptop to create, install and
load GmapGenome.Hsapiens.rCRS.
Note that the size on disk of GmapGenome.Hsapiens.rCRS is 449M which is
surprising considering
Hi guys,
OTOH indexMTGenome() only takes 20s on my laptop to create, install and
load GmapGenome.Hsapiens.rCRS.
Note that the size on disk of GmapGenome.Hsapiens.rCRS is 449M which is
surprising considering that the input of indexMTGenome() is a tiny 83K
FASTA file. That's for the source tree.
Hi Tim,
The options would be to make a data experiment package or put the data
in ExperimentHub.
Lori is our resident expert on these things but is out today. She'll be
back next week and can provide more info.
Valerie
On 11/8/18 9:27 AM, Tim Triche, Jr. wrote:
> What's the best/fastest way
What's the best/fastest way to do this? The package (MTseeker) will happily
build and install it for the user via the indexMTgenome() function, but
since I test for its presence prior to running examples, it seems like I
might as well have it available through BioC.
Thanks,
--t
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