ws
Sent: Tuesday, April 2, 2024 11:14 AM
To: bioc-devel@r-project.org
Subject: [Bioc-devel] Updating Package Issue
Last week I updated my package to fix a build error and pushed the devel
branch back to bioconductor, which I confirmed by cloning the devel branch
on a different computer and I see my
Last week I updated my package to fix a build error and pushed the devel
branch back to bioconductor, which I confirmed by cloning the devel branch
on a different computer and I see my changes there. However, the
multiplatform build is still using the wrong version (1.28, vs my corrected
version 1.
To: bioc-devel@r-project.org
Subject: [Bioc-devel] updating package on the development version
Hi,
I am trying to update previous release of my package (GISPA) on the development
version.
I pushed the changes and new release GISPA 1.13.1 following
https://secure-web.c
Hi,
I am trying to update previous release of my package (GISPA) on the development
version.
I pushed the changes and new release GISPA 1.13.1 following
https://bioconductor.org/developers/how-to/git/sync-existing-repositories/
But, I do not see the change on the bioconductor development versi
Sorry have realised I cloned with https!
Many apologies.
Mikhail
From: "Spivakov, Mikhail"
Date: Thursday, 24 October 2019 at 17:01
To: "bioc-devel@r-project.org"
Subject: Updating package via git fails
Hello!
I’ve just made some changes to our Chicago package that help avoid some common
er
Hello!
I’ve just made some changes to our Chicago package that help avoid some common
errors our users have encountered due to mis-specified parameters.
I tried pushing the update to github (push origin master), but it fails with
“fatal: remote error: FATAL: W any packages/Chicago nobody DENIED
Hi,
It seems like the email is configured correctly on BiocCredentials app. It is
because the account is not activated it doesn't work. You'd have to first
activate your account before moving forward with setting a password.
I've added your GitHub credentials to the account.
Best,
Nitesh
>
Hi,
I'd like to update my package Clonality
https://bioconductor.org/packages/release/bioc/html/Clonality.html
I used to do it through svn but as I understand it's not possible now.
I can't connect it to my git page with updated package
https://github.com/IOstrovnaya/Clonality
When I enter my
Hi Pedro,
The build system didn't pick up your changes because of an issue with
the script that we use to propagate the latest package changes to the
build machines. Sorry for that. The issue should be fixed now so
hopefully you'll see CEMiTool 0.99.9 on tomorrow's build report
(the report is upd
On Fri, Aug 18, 2017 at 1:46 PM, Pedro Russo wrote:
> Dear maintainers,
>
> I've followed the tutorials for updating my package CEMiTool in the new Git
> server as detailed in:
>
> https://www.bioconductor.org/developers/how-to/git/bug-fix-
> in-release-and-devel/
>
> including the steps
>
> git
Dear maintainers,
I've followed the tutorials for updating my package CEMiTool in the new Git
server as detailed in:
https://www.bioconductor.org/developers/how-to/git/bug-fix-in-release-and-devel/
including the steps
git checkout master
git push upstream master
git push origin master
However,
On 01/05/2017 01:25 PM, Charles Determan wrote:
I committed my changes earlier this morning from the 'devel' branch via
the 'git svn dcommit --add-author-from' the website
(https://www.bioconductor.org/developers/how-to/git-mirrors/). I have
yet to see any changes on the build page though for th
I committed my changes earlier this morning from the 'devel' branch via the
'git svn dcommit --add-author-from' the website (
https://www.bioconductor.org/developers/how-to/git-mirrors/). I have yet
to see any changes on the build page though for the `devel` (
http://master.bioconductor.org/checkR
That seems to have been the issue. It had been some time since I needed to
commit to bioconductor I forgot my username was different. Thank you
Martin for pointing that simple problem out. I have now 'dcommit' my
'devel' branch so if I understand correctly the changes should be with
bioconductor
On 01/05/2017 10:18 AM, Charles Determan wrote:
Not to be pushy but did anyone have any insights with this? I would hate
to have my package still sitting with the bug fix it requires.
maybe svn credentials,
git svn rebase --username=c.determan
??
Thanks,
Charles
On Wed, Jan 4, 2017 at 1
Not to be pushy but did anyone have any insights with this? I would hate
to have my package still sitting with the bug fix it requires.
Thanks,
Charles
On Wed, Jan 4, 2017 at 11:15 AM, Charles Determan
wrote:
> Hi,
>
> I received a notification that my package was failing some tests. I have
>
Hi,
I received a notification that my package was failing some tests. I have
since made the necessary fixes and pushed my changes to the github repo.
Previously this would result in http://gitsvn.bioconductor.org/git-push-hook
updating the package for bioconductor. I noticed however that this
de
Package developers --
Each Bioconductor release is accompanied by release notes that mention
new packages and other significant project developments. For the
forthcoming release we will include release notes for
individual packages, so that users have an easy way to survey changes
in their favorit
Package developers --
Each Bioconductor release is accompanied by release notes that mention
new packages and other significant project developments. For the
forthcoming release we will include release notes for
individual packages, so that users have an easy way to survey changes
in their favorit
Package developers --
Each Bioconductor release is accompanied by release notes that mention
new packages and other significant project developments. For the
forthcoming release we will include release notes for
individual packages, so that users have an easy way to survey changes
in their favorit
May I suggest that people use the new'ish NEWS.Rd format where the file is
placed in
inst/NEWS.Rd
and the content is written using Rd format.
Kasper
On Wed, Oct 8, 2014 at 1:30 PM, Dan Tenenbaum wrote:
> Package developers --
>
> Each Bioconductor release is accompanied by release notes that
Package developers --
Each Bioconductor release is accompanied by release notes that mention
new packages and other significant project developments. For the
forthcoming release we will include release notes for
individual packages, so that users have an easy way to survey changes
in their favorit
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