[Bioc-devel] warning when merging disjoint sets of seqlevels

2014-10-12 Thread Michael Lawrence
This recently became a warning, and I am not sure why. Yes, in the overlap case, that might be something to worry about. But a perfectly reasonable use case of merge,Seqinfo is to merge two disjoint sets of seqlevels. Now we're forced to use suppressWarnings() for that. Michael [[alternat

Re: [Bioc-devel] warning when merging disjoint sets of seqlevels

2014-10-12 Thread Hervé Pagès
Hi Michael, On 10/12/2014 02:02 PM, Michael Lawrence wrote: This recently became a warning, and I am not sure why. Yes, in the overlap case, that might be something to worry about. But a perfectly reasonable use case of merge,Seqinfo is to merge two disjoint sets of seqlevels. Now we're forced t

Re: [Bioc-devel] warning when merging disjoint sets of seqlevels

2014-10-13 Thread Michael Lawrence
But the behavior has changed for this case: merge(Seqinfo("chr1"), Seqinfo()) Before it was "each has seqlevels not in the other" but now it is "these two sets are disjoint". Subtle difference, but I think it's important? On Sun, Oct 12, 2014 at 11:46 PM, Hervé Pagès wrote: > Hi Michael, > >

Re: [Bioc-devel] warning when merging disjoint sets of seqlevels

2014-10-13 Thread Hervé Pagès
On 10/13/2014 07:45 AM, Michael Lawrence wrote: But the behavior has changed for this case: merge(Seqinfo("chr1"), Seqinfo()) Before it was "each has seqlevels not in the other" but now it is "these two sets are disjoint". Subtle difference, but I think it's important? What has changed is tha