RE: [Biojava-l] Parsing Code for Phylogenetic Trees

2001-03-15 Thread Michele Clamp
On Wed, 14 Mar 2001, Emig, Robin wrote: > Speaking as someone who started with pre1.0 biojava, I think you may >be changes with the following >Sequences (these were introduced close to the 1.1 release) >Gap symbols (I've been having problems with this implementation) >Alignments (When you c

Re: [Biojava-l] Maintaining biojava on several machines

2001-03-15 Thread Matthew Pocock
Hi Mark, The releases (e.g. 1.1) are stable and maintained. If you notice bugs in these, then please tell us and it will be fixed both in the release and the trunk. If you are intending to run production code using BioJava and 1.1 has the functionality, then I would advise using this. The mai

Re: [Biojava-l] Parsing Code for Phylogenetic Trees

2001-03-15 Thread Phillip Lord
> "Robin" == Emig, Robin <[EMAIL PROTECTED]> writes: Robin> However, It would be really great if you could mix Robin> and match components of JalView in Biojava. ie if you have Robin> ever seen Vector NTI and the way you can hide/rearrange the Robin> sequence view, the tree

[Biojava-l] Nested Errors and Nested Exceptions

2001-03-15 Thread Schreiber, Mark
Hi, Sorry if this has been covered before (I think it has) but when is it reccommended that nested errors and nested exceptions be used. They seem to be a useful "catch all", is this actually what they are for? Mark ___ Biojava-l mailing list - [EMAI

Re: [Biojava-l] Nested Errors and Nested Exceptions

2001-03-15 Thread Thomas Down
On Fri, Mar 16, 2001 at 08:31:26AM +1300, Schreiber, Mark wrote: > Hi, > > Sorry if this has been covered before (I think it has) but when is it > reccommended that nested errors and nested exceptions be used. They seem to > be a useful "catch all", is this actually what they are for? All new e