Hi Mark,
"Schreiber, Mark" wrote:
> Hi,
>
> Am I correct in thinking that to parse a blast output all I need to do is
> make a content handler by extending default handler and defining
> characters(), startElement() and endElement?
Absolutely.
> Also can any of the Qnames in BlastSAXParser be
Hi all,
I've made a few home-improvements in FeatureTableParser and
SeqFormatTools (which contains the static method for stringifying
EMBL/Genbank Locations).
Locations of the form
(123.456)..789
123..(456.789)
(123.345)..(456.678)
(plus combinations like <123..(456.789), (123.456)..>789)
sh
Hi,
This is a newbie's question: I'm trying to use the SuffixTree class, to
implement an algorithm "around" it.
Since this platform is completely new to me, I thought I can use someone's
experience with BioJava, and specifically with the SuffixTree class.
If someone has done some work relating to
Keith James wrote:
> Hi all,
>
> I've made a few home-improvements in FeatureTableParser and
> SeqFormatTools (which contains the static method for stringifying
> EMBL/Genbank Locations).
>
> Locations of the form
>
> (123.456)..789
> 123..(456.789)
> (123.345)..(456.678)
>
> (plus combinatio
> "Matthew" == Matthew Pocock <[EMAIL PROTECTED]> writes:
[...]
Matthew> Keith, do you want to write FuzzyPoint, or shall I?
Right now I'll need to spend some more time on the parser as it seems
to be having some problems (it has only been alive for about 24 hours,
though). Same with th
BOSC 2001 (http://www.open-bio.org/bosc2001/)
-
We are pleased to announce that the Bioinformatics Open Source
Conference (BOSC2001) is now open for registration. Please see the
web site at http://www.open-bio.org/bosc2001/ for complete de
Hi,
How much varience is there between blast versions and how well does the
SaxLikeBlastParser cope? Is there a way to produce a "standard" blast
output?
Mark
> -Original Message-
> From: Simon Brocklehurst
> [mailto:[EMAIL PROTECTED]]
> Sent: Tuesday, March 20, 2001 9:43 PM
> To: Schre
