[Biojava-l] Pfam utilities

2001-04-02 Thread Arnon Klein
Hi, Is there existing code that parses/analyzes Pfam libraries? Arnon -- ___ Biojava-l mailing list - [EMAIL PROTECTED] http://biojava.org/mailman/listinfo/biojava-l

Re: [Biojava-l] Error writing large Fasta seqs?

2001-04-02 Thread Thomas Down
On Mon, Apr 02, 2001 at 02:38:44PM +1200, Schreiber, Mark wrote: > If I make the following change to FastaFormat the problem is removed but I > am concerned about if this was the true cause of the problem: > > for(int pos = 1; pos <= seq.length(); pos += lineWidth) { > int end

[Biojava-l] Multithreaded DAS client

2001-04-02 Thread Thomas Down
I've done some tidying up on the BioJava DAS client code. It is now able to generate DAS 0.995-style multiple segment feature requests. It will also (optionally) use multiple threads to fetch features when you are using several annotation servers. You can try this out quickly by setting a syst

Re: [Biojava-l] Multithreaded DAS client

2001-04-02 Thread Matthew Pocock
Thomas Down wrote: > Hopefully Matthew will incorporate this into a new GUI client > release soon. Done. Collect from: http://www.ensemb.org/das/das-client.jar > >Thomas. > ___ > Biojava-l mailing list - [EMAIL PROTECTED] > http://biojava.org/

Re: [Biojava-l] Pfam utilities

2001-04-02 Thread Matthew Pocock
Arnon Klein wrote: > Hi, > Is there existing code that parses/analyzes Pfam libraries? > > Arnon > > -- > > > ___ > Biojava-l mailing list - [EMAIL PROTECTED] > http://biojava.org/mailman/listinfo/biojava-l Last time I checked we didn't have an

Re: [Biojava-l] Pfam utilities

2001-04-02 Thread Simon Brocklehurst
Matthew Pocock wrote: > Arnon Klein wrote: > > > Hi, > > Is there existing code that parses/analyzes Pfam libraries? > > > > Arnon > > > > -- > > > > > > ___ > > Biojava-l mailing list - [EMAIL PROTECTED] > > http://biojava.org/mailman/listinfo/bio

[Biojava-l] filters

2001-04-02 Thread Matthew Pocock
Hi. We have reached the point where the current filtering scheim for features has become inadequate, and no amout of duct-tape can hold things together. I am going to start work doday on coding up Thomas's & my filter-chains proposal. I will check code into org.biojava.utils.filter if any of