[Biojava-l] SAX2 support for Fasta

Inspired by the bootcamp, I've added a SAX2 event emitter for Fasta searches. This may be used in the same way as the others. It's backed by the same Fasta parser as the org.biojava.bio.program.search.FastaSearchBuilder, i.e. uses 'm 10' output. Thanks to the CAT team for making implementing thi

Re: [Biojava-l] SAX2 support for Fasta

Keith James wrote: > Inspired by the bootcamp, I've added a SAX2 event emitter for Fasta > searches. This may be used in the same way as the others. It's backed > by the same Fasta parser as the > org.biojava.bio.program.search.FastaSearchBuilder, i.e. uses 'm 10' > output. Excellent! > Thanks

[Biojava-l] biojava on mac os x server ?

Hi all, new to this list, i would simply ask if someone already try to compile and install biojava on a Mac OS X Server ? Thanks in advance, Yann ___ Biojava-l mailing list - [EMAIL PROTECTED] http://biojava.org/mailman/listinfo/biojava-l

[Biojava-l] bioperl-db

Just wanted to see who was it that was working on java bindings to a relational db of sequence data (Ewan's bioperl-db schema). I know Wolfgang was at least looking at it.. We should make sure that we have a dialogue on the lists so that if you see limitations or have ideas they get pushed over

[Biojava-l] Collections of sequences

I will be writing programs that deal will collections of sequences, either transient or static. I would not modifying the collection in any permantent sense just working with the collection. I am trying to figure out whether the SequenceDB interface is the place to start or is there another set of