Re: [Biojava-l] File formats and other questions

Hi David, David Waring wrote: > I am new to the bioinformatics community and Biojava, so bear with me if > these topics have been discussed before. > > Among the many file formats for DNA sequence data, I see that there is Java > support for Fasta, GFF, and EMBL. In addition to these, I will be

Re: [Biojava-l] Collections of sequences

David Waring wrote: > I will be writing programs that deal will collections of sequences, either > transient or static. I would not modifying the collection in any permantent > sense just working with the collection. I am trying to figure out whether > the SequenceDB interface is the place to sta

Re: [Biojava-l] biojava on mac os x server ?

I saw that a number of the laptops at our bootcamp were running Mac OS X, and seemed to be functioning fine. I didn't notice any OSX specific problems. Can somebody post insallation/running instructions for OSX? Thanks, Matthew Yann Le Guen wrote: > Hi all, > > new to this list, i would sim

[Biojava-l] Request for font change in SequencePanel.java

The current SequencePanel has the "Times New Roman" font hardwired into it and it has an unfortunate side effect on when running jdb with Sun's JDK 1.3.0. and 1.3.1-RC2 in Redhat 7.1. While running a biojava app directly is fine, for whatever reason, running it under debugger leads to:- Exception