Hi David,
There is a server at http://servlet.ensembl.org/das/ that serves
transcripts (currently an ensembl transcript is nearly equivalent to an
EMBL CDS). You can translate this if you wish by using the magic:
SymbolList translation =
RNATools.translate(
RNATools.transcribe(
transc
Hi
I sudgest that you create a new class called OverlayRenderer that
maintains a list of renderers much like MultiLineRenderer does (rip off
the listener manager code - it's debugged now!). It returns max rather
than sum over child depths for getDepth, and doesn't translate the
graphics conte
Hi - back from Genova - great conference. Anyhow...
If you create a SeqDBLite interface without the troublesome methods, and
have SequenceDB inherit from this and add back the troubling ones, then
I think we are OK. Existing code that purely uses SequenceDB to
fetch-by-index should over time u
Propose away - do we have ontologies for these things knocking about yet?
Cox, Greg wrote:
> I apologize for the cross-posting.
>
> I'm involved in the BioJava project, and I'm looking at constructing a
> uniform vocabulary for the parsed keys. For example, currently in BioJava,
> if an EMBL r
Actually, I just looked around for this type of
ontology last week and found nothing. I think it
would be a valuable tool.
Brad
--- Matthew Pocock <[EMAIL PROTECTED]> wrote:
> Propose away - do we have ontologies for these
> things knocking about yet?
>
> Cox, Greg wrote:
>
> > I apologize f
The sites below may be of some use:
http://www-smi.stanford.edu/projects/helix/riboweb/kb-pub.html
http://www.geml.org/
Also, there is a wealth of jump-off points anchored at
http://www.semanticweb.org
-Original Message-
From: Bradley Marshall [mailto:[EMAIL PROTECTED]]
Sent: Monday,
Another possibility
http://www.geneontology.org/
> -Original Message-
> From: Bradley Marshall [mailto:[EMAIL PROTECTED]]
> Sent: Monday, May 21, 2001 12:32 PM
> To: Matthew Pocock; Cox, Greg
> Cc: '[EMAIL PROTECTED]'; '[EMAIL PROTECTED]';
> '[EMAIL PROTECTED]'; '[EMAIL PROTECTED]'
> Sub
- Original Message -
From: "Matthew Pocock" <[EMAIL PROTECTED]>
To: "Cox, Greg" <[EMAIL PROTECTED]>
Cc: <[EMAIL PROTECTED]>; <[EMAIL PROTECTED]>;
<[EMAIL PROTECTED]>; <[EMAIL PROTECTED]>
Sent: Monday, May 21, 2001 7:18 AM
Subject: [Biopython-dev] Re: [BioXML-dev] Uniform parsing vocabular
>
> > -Original Message-
> > From: Bradley Marshall [mailto:[EMAIL PROTECTED]]
> > Sent: Monday, May 21, 2001 12:32 PM
> > To: Matthew Pocock; Cox, Greg
> > Cc: '[EMAIL PROTECTED]'; '[EMAIL PROTECTED]';
> > '[EMAIL PROTECTED]'; '[EMAIL PROTECTED]'
> > Subject: Re: [Biojava-l] Re: [BioXML-
