On Tue, Jun 26, 2001 at 10:36:11AM +1200, Schreiber, Mark wrote:
> Hi,
>
> I've been trying to use JAXP for XML parsing with the following snippet of
> code:
>
>
> InputStream is = new FileInputStream(args[0]);
> InputStreamReader isr = new InputStreamReader(is);
> char[
I ran across some non-intuitive behavior, and I wanted to check if I
should update documentation or implementation. In testing, I created an
embl parser with an embl file former as the listener.
TokenParser.TPStreamParser.characters() calls addSymbols on the
registered SeqIOList
On Tue, Jun 26, 2001 at 09:32:21AM -0400, Cox, Greg wrote:
> I ran across some non-intuitive behavior, and I wanted to check if I
> should update documentation or implementation. In testing, I created an
> embl parser with an embl file former as the listener.
> TokenParser.TPStreamP
> "Thomas" == Thomas Down <[EMAIL PROTECTED]> writes:
[...]
Thomas> So right now, the bug is in EmblFileFormat (which is
Thomas> ignoring the start and length parameters passed into
Thomas> addSymbols). It's a fairly minor change to fix this.
I think I've nailed this one now. I
Thanks for the patch. Everything works on this end too.
Greg
-Original Message-
From: Keith James [mailto:[EMAIL PROTECTED]]
Sent: Tuesday, June 26, 2001 10:34 AM
To: Thomas Down
Cc: 'Biojava-L (E-mail)
Subject: Re: [Biojava-l] Bug, or Feature? In TokenParser.TPStreamParser
> "Tho
> -Original Message-
> From: Thomas Down [mailto:[EMAIL PROTECTED]]
> Sent: Tuesday, June 26, 2001 8:05 PM
> To: Schreiber, Mark
> Cc: 'Biojava-L (E-mail)
> Subject: Re: [Biojava-l] JAXP
>
>
> On Tue, Jun 26, 2001 at 10:36:11AM +1200, Schreiber, Mark wrote:
> > Hi,
> >
> > I've been tr
Hi,
I'm trying to find java code for multiple sequence
alignment. I'm looking for something that uses
dynamic programming or matrix multiplication methods.
I know that time complexity grows exponentially with
this technique. I would like to see the effects of
parallesizing.
Dows anyone know
