[Biojava-l] Blast (bl2seq) parser

2001-07-11 Thread Johan Hattne
Hello, All. Is there a way to parse the output from bl2seq with biojava? I can't get the Blast parsers to handle it and I've looked around some, but without finding anything. // Rgds; Johan Hattne ___ Johan Hattne * R

Re: [Biojava-l] java or perl?

2001-07-11 Thread Jason Stajich
There is an AceDB adaptor in perl that Lincoln Stein wrote - you may want to check it out as I think it will help you get started. http://stein.cshl.org/AcePerl/ We have functionality in bioperl for reading sequences from AceDB files, but not a whole lot else since there is all the necessary fu