> "Michael" == Michael Muratet <[EMAIL PROTECTED]> writes:
Ack! HTML...
Michael> transitional//en"> Greetings All I've
Michael> encountered my first sequence which contains a "join" in
Michael> a cds feature. I'm using the latest release version
Michael> of biojava, with s
On Wed, Aug 22, 2001 at 09:54:14AM +0100, Keith James wrote:
>
> Michael> I can live with this, but I would like to catch the
> Michael> exception in my code so that I can skip further
> Michael> calculations. The exception is apparently caught
> Michael> somewhere in biojava. I'v
I am interested to implement something similar to the Netblast program
of GCG using JAVA. The program would take a sequence and other
parameters, send this to NCBI, and get the BLAST report back. I think
this would be quite useful for a number of laboratories.
This program would also complement th
Thomas Down wrote:
>
>
> - Skip the sequence
>
> - Skip just that feature
>
> - Abort the whole job (screaming exception)
>
> - Create a RemoteFeature
>
> - Create a truncated feature, with the correct type, but only
> covering the `local' segments of the actual location.
>
>
I'm working on parsing these locations too. The place to look is
EmblLikeLocationParser, and the sticking point is that this returns a
StrandedLocation, which just has the location and strand information.
If all you want to do is skip the feature and and move on with your life,
EmblLikeLocatio
On Wed, Aug 22, 2001 at 08:45:16AM -0500, Michael Muratet wrote:
>
> Note: I've switched to a plain-text editor.
Thanks :-).
> I'll take a look at the RemoteFeature class and see what I can do with
> it. From my point of view I'd vote skip the feature and alert the
> calling method so that it c
Hi Jean-Marie,
You may be interested in having a look AppLab analysis server stuff. It
provides OMG standard API for accessing applications, not just BLAST and
not only from Java.
The pkg contains also ready made java clients you can use or you can
write easily your own.
The page is http://cor
