Hi...
I've just put out a new release of the BioJava das-client
browser (dated 20010907). You can download it from:
http://www.biojava.org/download/das-client/
There are a few instructions at:
http://www.ensembl.org/das/client.html
There have been quite a few changes under the
On Thu, Sep 06, 2001 at 12:52:39PM -0700, David Waring wrote:
>
> > Here's an alternative: why not use the StreamParser interface
> > here? The reason that was added was to allow optimized code-paths
> > for simple cases (like single-character tokens) without having
> > to worry about details o
Hi Mark, I'm glad to see someone else looking at this.
I don't know what you mean by a "hospital pass," but handleDecorations() was
just a convenient way to encapsulate the decoration messiness. It proably
doesn't make sense to keep that method around, but that's your call. There
were bugs in
On Fri, Sep 07, 2001 at 10:17:42AM -0400, Cox, Greg wrote:
> Hi Mark, I'm glad to see someone else looking at this.
>
> I don't know what you mean by a "hospital pass," but handleDecorations() was
> just a convenient way to encapsulate the decoration messiness. It proably
> doesn't make sense
Hi,
I have done some
work on the top of current biojava blast parser. The implementation of the
BlastContentHandler class allows to use the eventbased parser in biojava to
instantiate blast/hit/hsp/hspsummary/blastlikealignment objects.
It is a very quick
implem
On Wed, 5 Sep 2001, David H Klatte wrote:
> Hello all,
>
> A fellow named Tim Dilks came across my website and suggested
> to me that some code I have there for opening ABI trace files might
> be a useful addition to the biojava project.
>
> I thought about that for a while and I looked at th
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