Re: [Biojava-l] FramedFeature interface

2001-09-14 Thread Hilmar Lapp
Matthew Pocock wrote: > > Does any of this tally with other peoples thoughts? > I agree with keeping strand and frame separate properties. Would also be consistent with Bioperl and other friends. -hilmar -- - Hilmar Lapp

[Biojava-l] LayeredRenderer clipping bug

2001-09-14 Thread Keith James
The sequence rendering system appears to be cutting off the last 1+ bases and associated features from the display. I've tracked this down (I think) to LayeredRenderer which appears to be clipping too enthusiastically because its boundary calculation is slightly off. I think the problem is in th

Re: [Biojava-l] LayeredRenderer clipping bug

2001-09-14 Thread Thomas Down
On Fri, Sep 14, 2001 at 03:34:22PM +0100, Keith James wrote: > > The sequence rendering system appears to be cutting off the last 1+ > bases and associated features from the display. I've tracked this down > (I think) to LayeredRenderer which appears to be clipping too > enthusiastically because

Re: [Biojava-l] LayeredRenderer clipping bug

2001-09-14 Thread Keith James
> "Thomas" == Thomas Down <[EMAIL PROTECTED]> writes: [...] >> If I fudge in an extra few pixels of width here, then the >> missing stuff reappears. Thomas> I'd actually be more inclined to suspect that it's the Thomas> Symbol and FeatureBlock renderers which are being T

[Biojava-l] Added TranslatedSequencePanel

2001-09-14 Thread Keith James
I've checked in TranslatedSequencePanel, an alternative to SequencePanel which draws at low graphics coordinates even when zoomed in to the end of very long sequences. Plus it's faster. There's a seqviewer/FastBeadDemo in demos which is exactly the same as seqviewer/BeadDemo, but using Translate

[Biojava-l] SimpleSymbolList is now editable

2001-09-14 Thread David Waring
A new version of SimpleSymbolList has now been checked in. I have implemented edit(). There seems to be a consensus that subLists should not be altered by an edit on the underlying SymbolList, and that is the way I constructed it. There was one suggestion that we could add an overloaded method tha