[Biojava-l] Authorization fail for login to CVS

2001-11-16 Thread Phei Sian
Hi, I am new to Programming and Bioinformatics. I am new to biojava as well. I wish to update the latest version using cvs. However when I try according to cvs.biojava.org, it prompt authorization fail. I will be appreciate if you can tell me what to do. Best Regards, Phei Sian

Re: [Biojava-l] Authorization fail for login to CVS

2001-11-16 Thread Cédric Gasnier
Hi, I've tried to checkout biojava project from cvs repository too, but I didn't manage! Have u got this message too ? --- Logging in to :pserver:[EMAIL PROTECTED]:2401/home/repository/biojava CVS password: *** cvs [login aborted]: connect to cvs.biojava.org(199.93.107.72):2401 failed: Con

Re: [Biojava-l] Authorization fail for login to CVS

2001-11-16 Thread chris dagdigian
I do not have any trouble at all with anonymous cvs (example enclosed below). Generally we have found that a majority of the people who have CVS troubles are behind firewalls or proxy servers that interfere with the process. If you have anonymous CVS trouble please do the following and report

Re: [Biojava-l] Parsing a BLAST file

2001-11-16 Thread Susan Glass
I am having a problem getting e-values back from hits and subhits of SequenceDBSearchResults after parsing a file and converting it to biojava objects using a BlastLikeSearchBuilder. Scores come back okay, but e-values are always NaN (even after updating to account for the "e-121" formats

Re: [Biojava-l] Authorization fail for login to CVS

2001-11-16 Thread Cédric Gasnier
It's probably a firewall problem ... I'm quite sure about this. TCP/2401 mustn't be opened in my society ! - Original Message - From: "chris dagdigian" <[EMAIL PROTECTED]> To: "Phei Sian" <[EMAIL PROTECTED]> Cc: <[EMAIL PROTECTED]>; <[EMAIL PROTECTED]> Sent: Friday, November 16, 2001 3:3

[Biojava-l] SymbolTokenization landing

2001-11-16 Thread Thomas Down
Hi... A while back, I posted a patch which replaced the current SymbolParser objects with SymbolTokenizations, which encapsulate both Symbol -> string and string -> Symbol mappings in a single object. I've been maintaining this code as a `branch' of the main development, including all the changes