I've found a slight problem with RNATools when transcribing/translating
DNA to RNA to protein.
Not sure if its a bug or I did something wrong.
I'm justing doing a simple RNATools.transcribe on a DNA symbol list.
It throws the following error:
Exception in thread "main"
org.biojava.bio.sym
On Mon, Dec 03, 2001 at 10:32:03AM -0500, Simon Foote wrote:
> I've found a slight problem with RNATools when transcribing/translating
> DNA to RNA to protein.
>
> Not sure if its a bug or I did something wrong.
> I'm justing doing a simple RNATools.transcribe on a DNA symbol list.
>
> It t
I've just added a new package, containing code for projecting
features between coordinate systems. This is basically the
guts of the ProjectedFeatureHolder class, refactored and made
fit for more public consumption. This package won't interest
the vast majority of users -- stick to the Projected
Hello,
A fresh checkout of the main trunk doesn't build as of this afternoon:
compile:
[javac] Compiling 610 source files to
/home/heuerm/working/biojava-live/ant-build/classes/main
[javac]
/home/heuerm/working/biojava-live/ant-build/src/main/org/biojava/bio/seq/io/CharacterTokenizat
io
On Mon, Dec 03, 2001 at 04:57:25PM -0500, Michael L. Heuer wrote:
> Hello,
>
>
> A fresh checkout of the main trunk doesn't build as of this afternoon:
>
> Strangely enough, it appears that none of the offending source files have
> been updated in cvs since Thomas' log entry "Big landing of the
On Mon, 3 Dec 2001, Thomas Down wrote:
> Anyone else seen problems with this?
>
A fresh checkout from cvs.biojava.org compiled fine as of a few minutes
ago.
cvs 1.11
jdk1.3.1
A cvs update -d from biojava.org (checkin site) didn't but I'm not overly
concerned as I find that when I get a month or
On Mon, Dec 03, 2001 at 11:45:38PM +, David Huen wrote:
>
> A cvs update -d from biojava.org (checkin site) didn't but I'm not overly
> concerned as I find that when I get a month or two out of sync, a update
> often doesn't compile while a fresh checkout does
Just a thought... Have you
I confirm that a fresh checkout as of this evening builds okay,
jdk1.4, cvs 1.11, on linux
I was having problems on solaris, jdk1.3.1, cvs 1.10.x. I'll investigate
further, but for now I'll chalk it up to a cvs snafu...
thanks
michael
On Mon, 3 Dec 2001, David Huen wrote:
> On Mon, 3
For fun I tried a tool for building class diagrams on the fly called
viztool on the biojava code:
see http://waywardgeeks.org/code/viztool
It produces more poster-on-the-wall rather than full-UML-style diagrams,
but they're not too bad.
Install the viztool library into the ant /lib directory a
