Hello,
does anyone know how to get an ensembl gene id out of the Ensembl database
(kaka.sanger.ac.uk) starting from a list of locuslink id?
Thanks a lot,
Stein Aerts
ESAT-SCD, KULeuven, Belgium
http://www.esat.kuleuven.ac.be/~dna/BioI/
winmail.dat
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On Thu, 3 Jan 2002, Stein Aerts wrote:
> Hello,
>
> does anyone know how to get an ensembl gene id out of the Ensembl database
> (kaka.sanger.ac.uk) starting from a list of locuslink id?
use the Xref tables. Here goes
mysql> select o.ensembl_id,o.ensembl_object_type from objectXref o,Xre
Does anyone have an example of some code that can be used to draw
motiflogo's from a distribution of information content per base? I'm
trying to use the classes and interfaces from biojava.org, but can't
figger out how I should program a working implementation.
Thanks in advance,
Bert
___
On Thu, Jan 03, 2002 at 02:37:30PM +0100, Bert Coessens wrote:
> Does anyone have an example of some code that can be used to draw
> motiflogo's from a distribution of information content per base? I'm
> trying to use the classes and interfaces from biojava.org, but can't
> figger out how I should
No objections here.
I made the change, and ran my script that generates a blast database of
all the bacterial proteins in GenBank using the release 127 gbbct files
and it worked fine. Also, worked fine on all the daily update files
upto today.
Only had to make a slight modification to my s
Dr. Jones,
I think the time is ripe for biojava interfaces to peptide-mass
fingerprinting search algorithms, and I am glad to see some interest
brewing. Let me express my interest, and relate to the list some of the
reasons. Based on what I have worked with from your previous JPAT library
and the
