I have recently updated my copy of the biojava source from CVS after a
long code freeze while developing some DAS code and may have detected a
problem. There appears to be a fatal bug that arises from a change in the
interaction between AssembledSymbolList and SimpleAssembly.
>From SimpleAssembly
Simon,
Thanks for trying out the new code. We'll check it in to the BioJava
CVS repository.
Scott
Simon Foote wrote:
>
> No objections here.
>
> I made the change, and ran my script that generates a blast database of
> all the bacterial proteins in GenBank using the release 127 gbbct files
>
On Sat, Jan 05, 2002 at 03:46:44PM +, David Huen wrote:
>
> I have changed AssembledSequenceList.length() to return 0 on an empty list
> in my own copy. Is this value compatible with other existing code? if
> so, I will commit my change to CVS.
That should be fine -- thanks.
> The other i
You might want to look at :-
http://www.it-analysis.com/article.php?id=1882
and consider supplying a reasoned response to what seems vice-like
deathgrip on the wrong end of the stick.
Regards,
David Huen
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Is that article even worth posting an opinion? I don't find his reasoning
compelling enough to warrant a response. If this had been posted in CNet
or bioinform I would be VERY alarmed.
-B
---
Brian Gilman <[EMAIL PROTECTED]>
Sr. Software Engineer MIT/
