David -
you can get control of how to write the GenBank line by using the "id
generation function" hook inside of the bioperl parser. You need to pass
in a function that generates the correct string from the bioperl sequence
object. This gives complete control of the LOCUS line. Ensembl has to
o
The locus line format did change recently. See the NCBI site for details. I
thought a patch made it into the BioJava code for this. Which version of
BioJava are you using?
Mike
> -Original Message-
> From: David Waring [mailto:[EMAIL PROTECTED]]
> Sent: Friday, January 18, 2002 5:54 PM
Ewan:
>BTW - Andrew's suggestion of writing out the header portion is almost
>certainly a bad idea. A format definition is a mixture of the precise
>definition and its common usage. Also the old adage rings true "be
>permissive in what you accept but strict in what you output".
Well, I didn't say
