[Biojava-l] Announce: BioJava Bootcamp 2002

2002-02-05 Thread Thomas Down
Thanks to the EBI Industry program, we are able to repeat last year's successful `BioJava bootcamp' workshop -- an introduction to the BioJava library for bioinformatics and computational biology. This year's event takes place from 18th to 22nd March, on the Wellcome Trust genome campus near Camb

[Biojava-l] taxa

2002-02-05 Thread Matthew Pocock
Hi. I've checked in a preliminary taxa implementation to: org.biojava.bio.taxa There is a demo at: demos/seq/TestSwissprotOrg.java and I've added a seq io object to: org.biojava.bio.seq.io.OrganismParser There is some work to do - I think Taxa instances should be annotatable, and also the

Re: [Biojava-l] taxa

2002-02-05 Thread Tom Oinn
Matthew Pocock wrote: > > Hi. > > I've checked in a preliminary taxa implementation to: > > org.biojava.bio.taxa > > There is a demo at: > > demos/seq/TestSwissprotOrg.java > > and I've added a seq io object to: > > org.biojava.bio.seq.io.OrganismParser > > There is some work to do - I t

[Biojava-l] GCG Format

2002-02-05 Thread Stine, Matt
Is there currently any work being done on GCG formatted data in bio.seq.io? I know there is a module within bioperl. Just curious before I started working on one of my own. Matt Stine Software Engineer Hartwell Center for Bioinformatics and Biotechnology St. Jude Children's Research Hospital 332