On Sun, 10 Feb 2002, Tony Watkins wrote:
All done except for:-
>
> Class TabelIndexStore
assume TabIndexStore intended here.
>
> Class SwissProtFileFormer
> (Original)
>
> Simple filter which handles attribute lines from an Swissprot entry
>
can't find this line
> Description
>
> (Origin
Schreiber, Mark wrote:
> Hi -
>
> For the less CVS literate amongst us (or just me) how can I set up CVS
> to capture the 1.2 branch and the biojava-live branch (and any other
> branch for that matter).
>
> Actually could someone summarise what brances there are and what each
> one could be u
I've written a packed version of a DNA symbol list (4 bits per symbol, 8
times cheaper than the current). Surprisingly, the performance seems OK -
I expected it to be abysmal. Its constructor can take and return data in
a byte array so data can be serialised from/to a database.
The drawback is
Cool David! Have you got any stats about the relative performance of
the raw and packed implementations? The issue with AlphabetIndex and
ambiguities is my fault. I wrote the imlementations not to index
ambiguities. What do you use an indexer for? I'm happy for you to commit
away. Thomas? Othe
Hi all,
I've checked in to org.biojava.bio the AnnotationType and
PropertyConstraint classes. These allow you to validate an annotation
against a 'template' to ensure that it has apropreate propery/value pairs.
Please, take this for a spin. You may find it fun! This is just a first
draft, so
David Huen wrote:
>
> The software I am attempting to write is now getting beyond the stage
> where I can conveniently keep all key aspects in (my) memory and I am
> looking for affordable development tools to assist me in doing this.
>
> I've considered using UML but cheap tools capable of the
