Build fails as the provider returns a SequenceDBLite rather than
SequenceDB. Presumably the test is just missing the cast so I added it
in CVS so the build works.
Keith
--
-= Keith James - [EMAIL PROTECTED] - http://www.sanger.ac.uk/Users/kdj =-
Pathogen Sequencing Unit, Wellcome Trust Sanger
On Thu, Feb 21, 2002 at 09:45:23AM +, Keith James wrote:
>
> Build fails as the provider returns a SequenceDBLite rather than
> SequenceDB. Presumably the test is just missing the cast so I added it
> in CVS so the build works.
Oh... rattus norvegicus. All my fault.
I changed the Sequenc
Hi there,
I've been trying to write an applet that displays a sequence. However,
it appears that because of an applets security restrictions
AlphabetManager.xml can't be loaded, which essentially put the
AlphabetManager class out of action. Any ideas of a way to get round this?
Kevin
On Thu, Feb 21, 2002 at 11:24:11AM +, Kevin Glover wrote:
> Hi there,
> I've been trying to write an applet that displays a sequence. However,
> it appears that because of an applets security restrictions
> AlphabetManager.xml can't be loaded, which essentially put the
> AlphabetManager cla
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Appologies for my last post on this topic something horrible
must have happened between my text editor and my MTA. Hopefully
won't happen again.
On Thu, Feb 21, 2002 at 12:05:14PM +, Kevin Glover wrote:
> Thomas Down wrote:
>
> > Which browser are you using? Java version? And what error
>
Thomas Down wrote:
> How are you invoking the applet? Could you send a copy of
> the element from your document?
>
Though I've also tried:
with exactly the same results.
___
Biojava-l mailing list - [EMAIL PROTECTED]
http://biojava.org/mai
Thanks David, this was well over due. I had a hokey .bat that did build
& release for me (I don't know if this got checked into cvs), but ant is
much better.
The only other thing is that the class which loads up links in browsers
potentialy requires a licence line to be added e.g. to our proje
Using the code below:
File genbankFile = new File(args[0]);
BufferedReader gReader = new BufferedReader(
new InputStreamReader(new FileInputStream(genbankFile)));
SequenceIterator sI = SeqIOTools.readGenbank(gReader);
while(sI.hasNext())
{
Seq
On Thu, Feb 21, 2002 at 01:22:04PM +, Kevin Glover wrote:
> Thomas Down wrote:
>
> > How are you invoking the applet? Could you send a copy of
> > the element from your document?
> >
>
>
>
> Though I've also tried:
>
> code="myGrid.seqviewer.FastBeadApplet" width="100%" height="100%
This doesn't look like a Genbank parser problem -- the XML
parser is required very early on in the initialization of the
code BioJava code, to load some XML data files. This is the
point where it seems to be failing.
BioJava now using Sun's JAXP API to obtain XML parsers --
this should make it p
Thomas Down wrote:
> On Thu, Feb 21, 2002 at 01:22:04PM +, Kevin Glover wrote:
>
>>Thomas Down wrote:
>>
>> > How are you invoking the applet? Could you send a copy of
>> > the element from your document?
>> >
>>
>>
>>
>>Though I've also tried:
>>
>>>code="myGrid.seqviewer.Fast
Just to announce that a repeat of last year's very successful Hinxton
Genome Informatics, jointly held by CSHL and the Wellcome Trust is being
run again this year, Sept 4th-8th. Web site with registration details can
be found at
http://meetings.cshl.org/hinxtonhall.htm
(close of registration
On Thu, Feb 21, 2002 at 05:09:26PM +, Kevin Glover wrote:
>
> > Hmmm, how come in the first example it's able to find any
> > BioJava classes at all? Have you included an unpacked copy
> > of BioJava in your directory structure.
>
> No, but both biojava and an XML parser exist in my class
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