[Biojava-l] ANN: Imagemap rendering

2002-04-15 Thread Keith James
Hi, I was asked to create imagemaps corresponding to the output of the SequenceRenderers so I've added some code for generating the image map coordinates concurrently with the image. This takes the form of a decorator on a FeatureRenderer which calculates the coodinates of the useful areas of th

Re: [Biojava-l] BioInformatics toolbox.

2002-04-15 Thread Patrick McConnell
We (Duke Bioinformatics Shared Resource) are going to make a concerted effort to create a software package that allows the piping of web services. We are going to focus on bioinformatics web services, though the project should be generally applicable to all web services. We are now in the proces

[Biojava-l] Hello, and a question

2002-04-15 Thread Brian Osborne
Colleagues, My name is Brian Osborne, I've been helping your sister organization, Bioperl, writing and correcting documentation over the last few months, and I've enjoyed it very much. I've just started a job at a company in New York City, Cognia, and I'm trying to find out if we want to use Bioj

Re: [Biojava-l] Hello, and a question

2002-04-15 Thread Matthew Pocock
Hi Brian, org.biojava.bio.seq.db.WebSequenceDB was my attempt at porting the bioperl NCBI client, but I consistently can't get any combination of arguments to the CGI to return a sensible result. Please feel free to hack that class about as you see fit. Please bother me or the list if you hav

Re: [Biojava-l] BioInformatics toolbox.

2002-04-15 Thread Alex Rolfe
> 2. Is there anyone interested in collaborating on this project? The level > of collaboration can vary from consulting on ideas to testing beta > applications to actual software coding. I will be coming up with a list of > sub-projects sometime in the near future (check the link below for the

Re: [Biojava-l] BioInformatics toolbox.

2002-04-15 Thread Simon Brocklehurst
Patrick McConnell wrote: > > We (Duke Bioinformatics Shared Resource) are going to make a concerted > effort to create a software package that allows the piping of web services. > We are going to focus on bioinformatics web services, though the project > should be generally applicable to all we

[Biojava-l] Isoelectirc point

2002-04-15 Thread Blum, Bruce
Hello, Does biojava have any class which can calculate a protein's isoelectric point if given a sequence? Thank you, Bruce Blum ___ Biojava-l mailing list - [EMAIL PROTECTED] http://biojava.org/mailman/listinfo/biojava-l