[Biojava-l] Stranded non-contiguous feature looses its strand in a SubSequence

Does anyone know why, if you make a subsequence, some of the features that are stranded in the original sequence are not stranded anymore in the subsequence? Would there be a workaround? Example: (embl file and the code I used is in attachment) features on the original sequence: ENSG011425

Re: [Biojava-l] Stranded non-contiguous feature looses its strandin a SubSequence

Hi Stein Aerts, When you make a sub sequence, the code takes that as a request to only tell you about the information in that region. Features that are wholy contained within it will be projected in with all their properties intact. Features overlapping but not contained will be replaced by p

[Biojava-l] Parser failure

Hi! What's wrong with this code: I've got a sequence in GenBank format from ftp://ncbi.nlm.nih.gov/genbank/genomes/C_elegans/CHR_I/worm_X.gbk and tried to parse it with this code: --- import org.biojava.bio.*; import org.biojava.bio.symbol.*; import org.biojava.bio.seq.*; im