Hi All,
I hope you are all enjoying your summer holidays. I look forward to
seeing some of you at ISMB soon.
I was wondering if anybody would object if the subStr and seqString
methods of SymbolList were deprecated with a message saying that you
should be using Thomas' excelent symbol tokeniz
Sounds like a good idea.
How about moving those methods to the DNA/RNA/ProteinTools classes where
tokenization can be assumed to be from the stated alphabet?
- Mark
> -Original Message-
> From: Matthew Pocock [mailto:[EMAIL PROTECTED]]
> Sent: Tuesday, 16 July 2002 3:53 a.m.
> To: [EMA
I would be strongly against it. Deprecating methods will always break
people's code. I'm sure it would break some of mine. I find that I am often
going between a String and a SymbolList since 1) I work with other peoples
non-biojavaized code 2) I work with a database that stores its sequence as
va
