[Biojava-l] Biojava and Emboss

Hi All, I am currently looking into integrating Biojava with Emboss and I could do with some of your input. To start the ball rolling I was thinking of coding for commonly used functions first. So, does anyone here use Emboss and if so, which functions do you tend to use? Shelly.

[Biojava-l] Trying to implement a restriction digest engine with BioJava

Hi, I'm trying to get together a program that would get a sequence and digest it using all enzynes found in a REBASE file. Recently, RestrictionEnzyme and RestrictionEnzymeManager were added to BioJava. I went over the doc and it still quite cryptic... How would I use these classes to digest a s

[Biojava-l] BioSQL ER diagram

I made an entity-relationship diagram of the BioSQL schema in biosqldb- mysql.sql using DataArchitect. You can get the diagram at http://www. animorphics.net/lifesci/biosql.html. Feel free to copy the diagram. I hope someone finds it useful. Brian

[Biojava-l] How to use the RestrictionEnzyme/RestrictionEnzymeManager classes

Hi, I would like to use these classes to digest Sequence objects. How would I do that? I tried to find something similar to Digest (proteomics class) but I could not find it. I would like to do a program like tacg that would produce digests but using frames. Cordially Sylvain ___