Re: [Biojava-l] An exception has occurred in the compiler

2002-09-24 Thread Matthew Pocock
Hi, Is it possible that one of your .jar files in the classpath you are compiling against is suffering from being newline munged rather than transferred as binary? Other than that, I'm all out of ideas. Matthew Willy Valdivia Granda wrote: > Hello > > I am trying to compile a java applicatio

RE: [Biojava-l] Impossible to catch Location parsing Error

2002-09-24 Thread Cox, Greg
With 2-4, the version I looked at didn't have the features that couldn't be parsed. With 1, the problem is that it's a circular sequence, and 134545^1 wraps around. At the boot camp two years ago, I think we decided the right thing to do is check the flag, and promote it to 134545^(sequenceleng

[Biojava-l] How to use SuffixTree?

2002-09-24 Thread hannah schmidt-glenewinkel
I was happy to see that there is a SuffixTree-class in biojava...but now I'm just not sure how to use it. I think I understood the concept of a suffix tree in general: it holds references to all suffices of a given string, so that I can search for a pattern that may or may not occur in that String

Re: [Biojava-l] Impossible to catch Location parsing Error

2002-09-24 Thread Hiroyuki Hashimoto
Thanks, Greg. I understood your opinion. Then, there is one proposal, to surely be reflected in the following version !! Add the following information to the error message; Former; "This line could not be parsed: misc_feature92619..88345" After an improvement, for example; "This line could