Hi,
I'm trying to serialize something which contains an alphabet and hence a
NameTokenization. However, NameTokenization is not serializable. Any
ideas how to get around this?
Thanks very much,
Lachlan
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Hi,
I wrote a program that would read and load huge genomic sequence files
(in my case, the H. sapiens genomic contigs from GenBank) into Sequences
(one per contig) to select sections of it for further analysis. It seems
to load the Sequence OK but when I am creating SubSequence objects from
On Thu, Oct 10, 2002 at 03:09:07PM -0400, Sylvain Foisy wrote:
>
> I wrote a program that would read and load huge genomic sequence files
> (in my case, the H. sapiens genomic contigs from GenBank) into Sequences
> (one per contig) to select sections of it for further analysis. It seems
> to l
Hi -
Does anyone know of any reason why NameTokenization cannot be
serialized? Possibly it just needs to be marked as Serializable (or
maybe as transient in Alphabet). I'm not at my normal computer right
know but I'll have a look at the source when I get home and make the
needed changes to the Bi
Hi all,
I see from the mailing list archive that there was mention of someone
creating a GCG format for BioJava. Did this happen? Is it necessary? I'm
interested in seeing how to convert from one format to another a bit like I
could with this bioperl script. Is something like this possible. I can
