Hi,
I am a new user of biojava and a need help for a genBank parser.
My problem is when I try to get the location of my feature. If the location
is : join(790078..790119,791193..791337)
no problem... I can get the min, the max and both blocks.
But, if the location is : join(AC1234:790078..790119,
On Fri, Oct 18, 2002 at 02:45:33PM +0200, Stephane Marcel wrote:
> Hi,
>
> I am a new user of biojava and a need help for a genBank parser.
> My problem is when I try to get the location of my feature. If the location
> is : join(790078..790119,791193..791337)
> no problem... I can get the min, th
Hi,
Things where part of the location is else-where are
represented by instances of the RemoteFeature class.
RemoteFeature instances use the normal APIs to
represent the local portion of the feature and expose
the whole nasty thing via extra API. In your code you
say:
if(feat instanceof RemoteFea
Hi,
I found why my program would crash with IndexOutOfBound error. I now
have a different problem. Here is my little program for parsing genomic
contigs as found at ftp://ftp.ncbi.nlm.nih.gov/genomes/H_sapiens. I am
using the .fa file for each chromosome.
import java.io.*;
import org.biojava.bio.
On Friday 18 Oct 2002 10:40 pm, Ren, Zhen wrote:
>
> I wonder what is SEC (the first one). Thanks.
>
Selenocysteine. Incorporated instead of Cys in some enzymes. Essential in
these cases.
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Hi -
This is almost certainy because the memory allocated to the JVM at start up has been
exceeded by importing such a large sequence.
A simple solution is to allocate more memory to your JVM using the -Xms option:
java -Xms1024M WECBFinder
this will start your program with 1024M (1
