On Thursday 24 Oct 2002 9:55 am, Thomas Down wrote:
>
> There's a fairly clear solution to this -- refactor PackedSymbolList
> to use a memory allocation scheme similar to ChunkedSymbolList
> (currently the default implementation for large sequences), so
> that new chunks can be allocated on the fl
Hi,
I'm new to BioJava and am very keen to learn more about it. I've got a
routine to read some Genbank sequences and do stuff and that works fine.
But I'm suprised it doesn't run faster. A basic read loop like:
sit = SeqIOTools.readGenbank(br);
while( sit.hasNext() ) {
Sequence
Hi -
Its often hard to compare a perl lib to biojava without knowing what the
perl lib does, biojava does a reasonable amount of checking that the
symbols used match the alphabet etc and does most of its work on Symbols
as Objects, probably the perl lib does everything as Strings.
You can cut dow
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