[Biojava-l] Web page buglette

Hi all... there appears to be a '"' missing on http://www.biojava.org/docs/, could someone with appropriate access search for http://www.biodas.org/>DAS client and replace with http://www.biodas.org/";>DAS client Cheers, Tom ___ Biojava-l mailing

RE: [Biojava-l] readGenbank performance

Hi, Thanks for your prompt replies! I'll try Java 1.4 and see how that compares. I should start looking at it anyhow.. I like the idea of listening for certain fields. Ideally, it would be great to tell the Genbank formatter I want fields X,Y and Z and it would just process those. Not a big deal

[Biojava-l] ACQUISITION OF ESTATES.

ASSISTANCE REQUIRED FOR ACQUISITION OF ESTATES. Dear sir, I write to inform you of my desire to acquire estates or landed properties in your country on behalf of the Director of Contracts and Finance Allocation of the Federal Ministry of works and Housing in Nigeria. Considering his very strateg

[Biojava-l] Call For Papers: 2003 Int'l Joint Conf. on CS and CE - Las Vegas, June 23, 2003

C A L L F O R P A P E R S The 2003 International Multiconference in Computer Science and Computer Engineering (14 Joint Int'l Conferences) Monte Carlo Resort, Las Vegas, Nevada, USA June 23-26, 2003

[Biojava-l] Emission with duration

Hi - How difficult would it be to make a markov model that emitted sequence from a state using a duration distribution. For Example in gene finding programs the model often loops over the coding state, unfortunately this means the probability of a certain length of sequence declines geometrically.

[Biojava-l] New Ant target 'docbook'

Anyone with Ant 1.5+ should now be able to build the DocBook XML docs into XHTML by typing 'ant docbook'. The build now degrades properly on Ant 1.3/1.4 without causing it to choke. To avoid a Catch 22 situation, here's the build requirements/instructions reproduced from the rendered version: Ob

[Biojava-l] Suffix Trees

G'day all, I have a project that I think would work out nicely using suffix trees, and as I'm thinking of doing the project in either C or Java I thought I'd check out the bioJava source. From what I've seen I think I would have to modify/extend the SuffixTree source (still looking/thinking).

RE: [Biojava-l] Suffix Trees

Hi - The web cvs is fairly upto date, it can take an hour or two for changes to perpetuate from the cvs tree to the web. I don't think the suffix tree stuff has changed for quite a while. If you want to improve or extend the suffix tree code go for it :) - Mark > -Original Message- > F