I'm taking a look at a circular genbank sequence of length n with a location
n^1 on it. I think that what has to happen is the size of the sequence and
if it is circular have to be passed down to EmblLikeLocationParser, which
will check each location and convert x..y on the sequence to a
CircularL
On Mon, Nov 11, 2002 at 08:53:54AM +0100, Eric Jain wrote:
> Is there any reason for the org.biojava.bio.symbol.LocationTools.buildLoc
> method to be protected rather than public?
There are two methods of that name:
(package-private) static Location buildLoc(List locList);
protected sta
> I presume you're actually talking about the latter. I'd
> be quite happy to have this as public API, if it's going to
> be useful.
Yes, thank you.
> The current name isn't terribly good for a publiuc
> method, though. How about:
>
> static location makeContigiousLocation(int min, int
> "Greg" == Cox, Greg <[EMAIL PROTECTED]> writes:
Greg> I'm taking a look at a circular genbank sequence of length n
Greg> with a location n^1 on it. I think that what has to happen
Greg> is the size of the sequence and if it is circular have to be
Greg> passed down to EmblLik
Hi -
I have struggled with the circular sequence api for a long time. I can't
think of any way to avoid parsing the length of the sequence as this is
nescessary for converting the coordinates. If you can it would be really
cool.
- Mark
> -Original Message-
> From: Cox, Greg [mailto:gcox
What's the difference between these two and when would you use one as
opposed to the other? They seem to share code and both implement an
interface called IndexStore... but these are two *different*
interfaces both called IndexStore. I'm confused.
ta,
Keith
--
- Keith James <[EMAIL PROTECTED]
Is there any will to replace the current monolithic parsers for
embl/genbank/swissprot et.al. with modular event-based parsers based
upon tag-value? If we did this then the location parsing module can just
listen for sequence length events. I realy have no idea how the
performance of the two ap
Keith James wrote:
What's the difference between these two and when would you use one as
opposed to the other? They seem to share code and both implement an
interface called IndexStore... but these are two *different*
interfaces both called IndexStore. I'm confused.
ta,
Keith
Hi,
One is lega
Mp3sa yine bir ilki gerçekleþtiriyor: Klip arþivi!
Full albüm ve single parçalar mp3 halinde!
Arayýpta bulamadýðýnýz bütün parçalar için birde sitemize bakýn: http://www.mp3sa.com
Full Turkçe Album
Full Yabancý Album
A-Z Yerli Mp3
A-Z Yabancý Mp3
En Iyý 20
Yerli Výdeo Klýp
Yabancý Výdeo Klýp
