[Biojava-l] pdbtoXML in Linux and JRE,SE

2002-11-16 Thread jon portuondo murguiondo
Hello, I have a problem in the application PDBtoXML.java (I work in Linux). I have the Java (TM) 2 Runtime Environment, Standard Edition (v 1.4.1). I have the biojava libraries biojava-20020823.jar, bytecode-0.91.jar, jakarta-regexp.jar, xerces.jar in the CLASSPATH environment variable. This is

Re: [Biojava-l] pdbtoXML in Linux and JRE,SE

2002-11-16 Thread Matthew Pocock
Hi Jon, When running java classes, you should not add a .java extention to the class name. Typing "java pdbtoXML.java" trys to find a class called pdbtoXML.java rather than one named pdbtoXML. Try putting the following code into a file named PDBConverter.java : import java.io.*; import org.bio