[Biojava-l] features by location

2003-02-14 Thread Karin Lagesen
I have a Sequence which I have stuck several Features onto. I would now like to iterate over these features, in the order that they appear on the genome (i.e. a Feature from [7,10] comes before [8-20]). I see that there is an inner class in Feature called Feature.ByLocationComparator, I am just won

Re: [Biojava-l] features by location

2003-02-14 Thread Thomas Down
On Fri, Feb 14, 2003 at 10:10:34AM +0100, Karin Lagesen wrote: > I have a Sequence which I have stuck several Features onto. I would > now like to iterate over these features, in the order that they appear > on the genome (i.e. a Feature from [7,10] comes before [8-20]). I see > that there is an in

[Biojava-l] reading .scf file formats

2003-02-14 Thread David Atlan
hi everyone, I am currently writing an application which displays among other things traces from sequencers, is there a piece of code already written for reading .scf files somewhere on the CVS? thanks a lot david atlan ___

Re: [Biojava-l] Parsing massive blast-like output (was... Problemswith SAX parsing)

2003-02-14 Thread Matthew Pocock
Great. Thanks Simon. I hate tracking down these reference leaks. Matthew Simon Brocklehurst wrote: Re: Parsing massive Blast output In regard of recent mail to the list (and from up to a couple of years ago) Up 'til now, when attempting to parse *very* large blast outputs consisting of many (

[Biojava-l] biojava workshop

2003-02-14 Thread Russell Smithies
check out the photo of Mark Schreiber's workshop at the NZ Bioinformatics Conference :-) http://bioconf.otago.ac.nz/ ___ Biojava-l mailing list - [EMAIL PROTECTED] http://biojava.org/mailman/listinfo/biojava-l