RE: [Biojava-l] Phred Sequence

Yes, just me violating all the principles of OO programming :( I'll change it to return a Symbol (which would have been the sensible thing for me to do in the first place). I'll check to CVS in about an hour. - Mark > -Original Message- > From: David Waring [mailto:[EMAIL PROTECTED] >

[Biojava-l] New SeqIOTools API

Hi All, Thanks to Keith for rationalizing SeqIOTools. I'll be adding a revision to the "How Do I read a GenBank, SwissProt or EMBL file?" tutorial in Biojava in Anger to show how some of the new stuff can be used. Good work! I also noticed going through CVS that some of our stuff hasn't changed

[Biojava-l] New Message for [email protected]

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RE: [Biojava-l] Filtering mRNA from GenBank format files

Hi - If you want to filter while reading sequence in you could write something that overides SeqIOFilter and implements ParseErrorSource and only passes on events from GenBank sequences of interest. This is a bit more complicated and requires a more detailed understanding of the SeqIO API but is u